PRECISE: Software for Prediction of cis-Acting Regulatory Elements
نویسندگان
چکیده
منابع مشابه
PLACE: a database of plant cis-acting regulatory DNA elements
PLACE (http://www.dna.affrc.go.jp/htdocs/PLACE/) is a database of motifs found in plant cis -acting regulatory DNA elements, all from previously published reports. It covers vascular plants only. In addition to the motifs originally reported, their variations in other genes or in other plant species reported later are also compiled. The PLACE database also contains a brief description of each m...
متن کاملPlant cis-acting regulatory DNA elements (PLACE) database: 1999
PLACE (http://www.dna.affrc.go.jp/htdocs/PLACE/) is a database of nucleotide sequence motifs found in plant cis-acting regulatory DNA elements. Motifs were extracted from previously published reports on genes in vascular plants. In addition to the motifs originally reported, their variations in other genes or in other plant species in later reports are also compiled. Documents for each motif in...
متن کاملPrediction of cis-regulatory elements of coregulated genes.
We present a computational pipeline to predict cis-regulatory elements composing results based on different algorithms: Clover, Cluster-Buster, an own implementation of human/rat/mouse sequence identity and our ITB algorithm. The procedure uses information from the human genome sequence, NCBI gene annotations, verified eukaryotic promoters (EPD), experimentally proven binding sites (Transfac) a...
متن کاملPreCisIon: PREdiction of CIS-regulatory elements improved by gene’s positION
Conventional approaches to predict transcriptional regulatory interactions usually rely on the definition of a shared motif sequence on the target genes of a transcription factor (TF). These efforts have been frustrated by the limited availability and accuracy of TF binding site motifs, usually represented as position-specific scoring matrices, which may match large numbers of sites and produce...
متن کاملcis-ACTING SEQUENCE ELEMENTS IN ALPHAVIRUS RNAS
INTRODUCTION................................................... 492 The Cast of Characters ................................................... 492 Dispersal of Alphaviruses................................................... 494 Full-Length Clones of Alphaviruses ................................................... 494 STRUCTURE OF ALPHAVIRUSES ................................................... ...
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ژورنال
عنوان ژورنال: Journal of Heredity
سال: 2005
ISSN: 1465-7333,0022-1503
DOI: 10.1093/jhered/esi094